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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0093s0071.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | WRKY | ||||||||
Protein Properties | Length: 518aa MW: 56834.1 Da PI: 7.4617 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.9 | 4.4e-33 | 193 | 249 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgse+prsYY+Ct++gCp+kkkvers d++++ei+Y+g+Hnh Kalax.0093s0071.1.p 193 DDGYNWRKYGQKQVKGSENPRSYYKCTFPGCPTKKKVERSL-DGDITEIVYKGSHNHA 249 8****************************************.***************7 PP | |||||||
2 | WRKY | 105.7 | 2.4e-33 | 362 | 420 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct +gCpv+k+ver+++d ++v++tYeg+Hnh+ Kalax.0093s0071.1.p 362 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHD 420 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.9E-29 | 183 | 251 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-25 | 186 | 251 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.03 | 187 | 251 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.7E-36 | 192 | 250 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.4E-25 | 193 | 248 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.7E-37 | 347 | 422 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-29 | 354 | 422 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.377 | 357 | 422 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-39 | 362 | 421 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.0E-26 | 363 | 420 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 518 aa Download sequence Send to blast |
MAASSANSPF SLSPSFMNNS FSDLLNSPAA VAPGDDSTLL NGSVNRGAPK FKSLHPPSLL 60 PVSPTPASPS SYFAFPPGLS PSELLDSPVL LTSSYLLPSP TTGSFPAAQP HNWSVSGQHD 120 VKPEDSRNQN NTSSYSDFTF QPELRTVSQQ PWNFKSYQSQ QKTDSISNER VSGDYSSYQP 180 APIQSVREAR RSDDGYNWRK YGQKQVKGSE NPRSYYKCTF PGCPTKKKVE RSLDGDITEI 240 VYKGSHNHAK PQSTRRSASN GSHPMQHVNG ELQAQEHSVG SQMVANQLSD HSAATPENSS 300 VSVGDDDRSS SRRVGDDKLD DDEPDHKRWK RENEGEIMSA PGCRAVREPR VVVQTTSDID 360 ILDDGYRWRK YGQKVVKGNP NPRSYYKCTN PGCPVRKHVE RASHDLRAVI TTYEGKHNHD 420 VPAARGSGSH SRQAAANNSC VTNSTHHQSS TGQPATAQQA PFTLEMLHGP ESFGFGNPVS 480 AYNNVNGRQQ NPDCSVFPRT KEEPREDQFL ESICYAD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2lex_A | 2e-37 | 183 | 423 | 8 | 78 | Probable WRKY transcription factor 4 |
1wj2_A | 2e-37 | 183 | 423 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT053994 | 2e-54 | BT053994.1 Zea mays full-length cDNA clone ZM_BFc0103O21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007142085.1 | 1e-173 | hypothetical protein PHAVU_008G251300g | ||||
Swissprot | Q8S8P5 | 1e-109 | WRK33_ARATH; Probable WRKY transcription factor 33 | ||||
TrEMBL | V7B8C1 | 1e-173 | V7B8C1_PHAVU; Uncharacterized protein | ||||
STRING | GLYMA14G38010.1 | 1e-168 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38470.1 | 1e-101 | WRKY DNA-binding protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0093s0071.1.p |